Fortunately, most modern TPMS modules (including these Schrader brand units) have replaceable Schrader valve stems. So if you ruin them, it will cost you around $7 plus labor to replace.
As others have said, a little Dremel tool work with a cut-off disk will enable you to pry them loose. You will be working way above the valve core, so there's almost no chance that you will compromise things too greatly. But when you are done, rotate each to the point where they point downwards and blow out any debris as that will find it's way to the core seal and create leaks next time you attempt to add air.