You haven't listed what you're using for boost control, so I'm assuming you're using the stock solenoid?
My 3 port controller (MAC) makes a noticeable fluttering noise with my VF48 as I get into higher boost/approaching target boost as it starts venting excess boost pressure. It's kind of an on-off-on-off-on-off scenario many times per second, so it gives you that ts-ts-ts-ts-ts-ts and much louder/more noticeable than the stock 2 port controller.
I was going to originally suggest your wastegate actuator but that really only applies to the stock TD04, the VF series turbo actuators are fine and non adjustable anyway.